CDD - Conserved Domain database | Tool name | CDD - Conserved Domain database |
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| URL | http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml |
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| Important features | Collection of well-annotated multiple sequence alignments for domains and full-length proteins, available as position-specific score matrices (PSSMs). |
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| Citations | Marchler-Bauer A, Panchenko AR, Shoemaker BA, Thiessen PA, Geer LY, Bryant SH. CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 2002 Jan 1;30(1):281-3. PubMed PMID: 11752315.
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH. CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9. Epub 2010 Nov 24. PubMed PMID: 21109532. |
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| Year of publication | 2002 |
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| Rank by usage frequency | 84 |
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| Comments | |
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| Function | Database, Domain Prediction |
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| Category | Online/Downloadable, Free |
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